I guess it really comes down to what you're trying to achieve here...
Well, I have a Due, but not a mega, but I guess I can buy one.
I want to replace the Bosch L-Jettronic ECU on a BMW k75 motorcycle, it is a 3-cyl, 120 degree engine, however, it currently has a MAF sensor (which I would like to retain), some flapper that I don't really understand, a switch TPS (which I will replace with a pot), and no IAT, or O2 sensor (I can add both if needed) It also has 3 independent throttle bodies, between the head, and plenum box, and no map sensor. (can I use just one cyl as the map source?)
Down the road, I may add a turbo...
The L-Jettronic system is crap, plain and simple, but I really don't want to give my money to the MS guys.
I am more then willing to make my own hardware, it is the software that I have trouble with.